| | | | The combinations of these primers amplify segments from BP template DNA of: BPA/BPF - 196 bp; BPA/BPB - 560 bp; BPA/BPG - 933 bp; BPD/BPB - 207 bp; BPD/BPG - 580 bp; and BPE/BPG - 221 bp.
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| | | | The following PCR procedure was adapted from Wang et al. (35):
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| | | | i) | For BP PCR, the DNA in each extracted sample (Section 1.3.1.) is denatured by heating in a boiling water bath for 3 minutes followed by quick chilling in ice-water.
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| | | | ii) | 25 µl reaction mixture containing 5 mM of each primer, 1.5 mM MgCl2, and 0.5-1 unit of DNA polymerase is added.
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| | | | iii) | After heating the reaction mixture for 3 minutes at 95°C, 30 PCR cycles (a DNA melting step at 94°C, a primer annealing step at 60°C, and an elongation step at 72°C) are performed followed by an elongation step of 5 minutes at 72°C.
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| | | | iv) | The resultant PCR products may be compared with molecular standards by 2% agarose gel electrophoresis or assayed for with a specific DNA probe for the fragment following a Southern transfer.
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| | | | v) | The following controls should be included in every PCR assay for BP: a known negative tissue or faecal sample; a known positive tissue or faecal sample (this can be the DNA clone from which a specific set of primers was designed); and a 'no- template' control.
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| 2. | Diagnostic Methods for Confirmatory Tests
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| | Confirmation of infection by BP may be accomplished with any of the methods listed in Section 1 (i.e. wet-mounts of hepatopancreas tissue squashes or of faecal strands, or by PCR). The other methods available for confirmatory diagnosis of BP include: autofluorescence with phloxine, and routine histological methods (1, 3-5, 20-22, 33).
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| | 2.1. | Autofluorescence method with phloxine stain
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| | | Another method for detecting BP occlusion bodies is based on the fluorescence of phloxine-stained occlusion bodies (3, 21, 33). Aqueous 0.001% phloxine may be added to tissue squash preparations to make wet-mounts of hepatopancreas or faeces for direct examination. Histological sections stained with routine haematoxylin and eosin (H& E) containing 0.005% phloxine, are also suitable for this procedure. BP occlusions in wet-mounts of tissue squashes, in faeces, or in histological sections fluoresce bright yellow-green against a pale green background under epi-fluorescence (barrier filter of 0-515 nm and a 490 nm exciter filter). Other objects in the tissues and insect baculovirus occlusion bodies do not fluoresce with this method. Hence, the method can provide a rapid and specific diagnosis.
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| | 2.2. | Histological methods
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| | | Histology may be used to provide a definitive diagnosis of BP infection. Because 10% buffered formalin and other fixatives provide, at best, only fair fixation of the shrimp hepatopancreas (the principal target organ for BP and other baculo-like virus infections of penaeid shrimp), the use of Davidson's fixative (containing 33% ethyl alcohol [95%], 20% formalin [approximately 37% formaldehyde], 11.5% glacial acetic acid, and 33.5% distilled or tap water) is highly recommended for all routine histological studies of shrimp (1, 3, 21). To obtain the best results, dead shrimp should not be used. Only live, moribund, or compromised shrimp should be selected for fixation and histological examination. Selected shrimp are killed by injection of fixative directly into the hepatopancreas; the cuticle over the cephalothorax and abdomen just lateral to the dorsal midline is opened with fine-pointed surgical scissors to enhance fixative penetration (the abdomen may be removed and discarded), the whole shrimp (or cephalothorax less the abdomen) is immersed in fixative for 24-48 hours, and then transferred to 70% ethyl alcohol for storage. After transfer to 70% ethyl alcohol, fixed specimens may be transported by wrapping in cloth or a paper towel saturated with 70% ethyl alcohol and packed in leak-proof plastic bags. To begin histological processing, fixed shrimp are 'cut-in' (see ref. 1 for a photographic guide to this procedure) to facilitate eventual sectioning of the hepatopancreas and midgut. After dehydration, the specimens are embedded in paraffin and sections of 5-7 µm thickness are cut. Routine histological stains such as Mayer-Bennett's or Harris H& E, Giemsa stains, and Gram tissue-staining methods may be used for the demonstration of pathognomonic (for BP) tetrahedral occlusion bodies in hepatopancreatocytes, gut epithelial cells, or gut lumen (3, 4, 6, 21). Typically, BP-infected hepatopancreatic (or occasionally midgut) cells will present markedly hypertrophied nuclei with single or, more often, multiple occlusion bodies, chromatin diminution and margination. Occlusion bodies may be stained bright red with H& E stains, and intensely, but variably, with Gram's tissue stains. Brown and Brenn's histological Gram stain, although not specific for baculovirus occlusion bodies, tends to stain occlusions more intensely (either red or purple, depending on section thickness, time of decolouration, etc.) than the surrounding tissue, aiding in demonstrating their presence in low-grade infections (3-5, 20-22).
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| | 2.3. | Molecular methods
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| | | Nonradioactive DIG-labelled gene probes to BP have been developed and some are commercially available (3, 7-9, 21, 22, 25). Gene probe and PCR methods may provide greater diagnostic sensitivity in detecting low-grade infections than do more traditional wet-mount or histological techniques. Furthermore, the PCR method (see Section 1.3.) has the added advantage of being applicable to nonlethal testing of faecal samples collected from valuable broodstock shrimp.
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| | | DIG-labelled DNA probes for representative strains of BP are commercially available as ShrimProbeTM kits from DiagXotics (Wilton, Connecticut, USA). The probes are labelled with a nonradioactive label, digoxigenin-11-dUTP (DIG). These probes only work well with the in-situ hybridisation method with histological sections because there are substances present in the hepatopancreas and faeces of shrimp that provide both false-positive and false-negative results with samples that are blotted directly and not extracted prior to probing.
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| | | . | 2.3.1. Dot-blot hybridisation procedure for BP
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| | | | While specific DNA probes for BP are available, their use in dot-blot hybridisation procedures is not recommended for most routine diagnostic applications. Pigments present in the hepatopancreas leave a coloured spot on the hybridisation membrane that can result in the masking of a positive test or in the false interpretation of a negative test. Likewise, bits of chitin (which nonspecifically bind DNA probes), pigments, and other materials present in the faecal sample may also result in false-positive or false-negative dot-blot hybridisation tests. Extraction of DNA from the hepatopancreas or faeces prior to blotting or the use of chemiluminescent or radioactively labelled probes may circumvent these problems, but the adequacy of other test methods (i.e. direct wet-mounts, histology, or PCR) has not indicated a need for the further refinement and application of the dot-blot method (21).
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| | | . | 2.3.2. In-situ hybridisation procedure
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| | | | The in-situ hybridisation protocol given in detail in Section 1.2. of Chapter 4.1.6. Infectious hypodermal and haematopoietic necrosis virus (IHHNV), uses the GeniusTM System developed by Boehringer Mannheim Biochemicals (now Roche Diagnostics) and was adapted from the Boehringer Mannheim's Nonradioactive In Situ Hybridization Application Manual. An additional step is required for the in-situ hybridisation test for BP. Follow steps i-vi of Section 1.2., in-situ hybridisation procedure for IHHNV, in Chapter 4.1.6. For BP substitute the following modifications to step vii before proceeding with steps viii-xvii as given for IHHNV:
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| | | | i) | (Modified step vii): Boil the DIG-labelled probe for 10 minutes and quench on ice; spin briefly in the cold (~4-10°C) using a refrigerated centrifuge or a chilled microcentrifuge to bring all the liquid down to the base of the microcentrifuge tube; keep on ice. Dilute the probe to 50 ng/ml in prehybridisation solution and cover the tissue with 500 µl of the solution. Denature the double-stranded viral DNA in the tissue of the histological section by placing the slides on a 85°C heat block (or on aluminium foil that is placed over a boiling water bath) for 6-10 minutes. Quench the slides on ice for 5 minutes. Incubate the slides overnight at 42°C in a humid chamber. Drain the fluid on to blotting paper. During this incubation step, keep the wash buffers at 37°C to prewarm them.
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| | | | ii) | Proceed with steps viii-xvii as given for IHHNV.
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| | | | | With DIG-labelled probes, accumulations of BP viral DNA within infected cell nuclei, in cytoplasmic phagosomes, or in necrotic tissue debris are stained blue to a dark blue-black. Although they contain virus, occlusion bodies do not normally react with DIG-labelled DNA probes because the occlusion body protein crystalline matrix does not permit penetration of the probe (21).
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